Navigating the ML Pipeline Jungle with MLflow: Notes from the Field with Thunder Shiviah

Oct 15, 2018Download as pptx, pdf1 like1,347 views

Plumbing has been a key focus of modern software engineering, with our API/services/containers/devops driven landscape so it may come as a surprise that plumbing is where AI projects tend to fail. But it is precisely because our modern software development focuses on decoupled plumbing that we have struggled to handle the rise of AI. Specifically, companies are able to use AI effectively when they are able to create end-to-end AI model factories that explicitly account for coupling between data, models, and code. In this talk, I will be walking through what a model factory is and how MLFlow’s design supports the creation of end-to-end model factories as well as sharing best practices I’ve observed helping customers from startups to Fortune 50s create, productionize, and scale end-to-end ML pipelines, and watching those pipelines produce serious, game changing business impact.

Navigating the ML Pipeline Jungle
with MLflow: Notes from the Field
Thunder Shiviah
thunder@databricks.com
#SAISDS11

Who am I
2
● Databricks Solutions Architect
focused on machine learning and
deep learning
● Previously McKinsey Data Scientist
and QuantumBlack Machine
Learning Engineer designing and
building ML pipelines for Fortune 100
companies
● Developed and deployed models
across diverse verticals such as
healthcare, telecom, finance, and
renewable energy

3
● Overview of challenges with AI in production
● How we’re solving these challenges
● Demos
● A final word on where AI in production is heading
● Q&A

AI is a Game Changing Opportunity
OPPORTUNITY
Fraud Detection
Genome Sequencing
Recommendation Engine
Predictive Maintenance
…
LOTS OF NEW DATA
Customer Data
Click Streams
Sensor data (IoT)
Video/Speech
…
DATA SCIENTISTDATA ENGINEER
BUSINESS
Machine Learning Requires
Collaborative Experimentation on Big
Data

$Hardest Part of AI isn’t AI, it’s plumbing ML Code Configuration Data Collection Data Verification Feature Extraction Machine Resource Management Analysis Tools Process Management Tools Serving Infrastructure Monitoring “Hidden Technical Debt in Machine Learning Systems,” Google NIPS 2015 Figure 1: Only a small fraction of real-world ML systems is composed of the ML code, as shown by the small green box in the middle. The required surrounding infrastructure is vast and complex.$

ML Lifecycle is Manual, Inconsistent
and Disconnected
● Ad hoc approach to track
experiments
● Very hard to reproduce
experiments
Data Prep
● Multiple tightly coupled
deployment options
● Different monitoring approach
for each framework
Build Model Deploy Model
● Low level integrations for
Data and ML
● Difficult to track data used
for a model

How we’re making AI in
production simple

● ML Runtime - Pre-configured ML libraries for CPU and GPU
● Pandas vectorized UDFs
● Distributed Transfer learning with deep learning pipelines
● MLflow
Simplifying the AI pipeline

New: Databricks Runtime for ML
Ready to use clusters with built-in ML Frameworks
GPU support

Run your native Python code with PySpark, fast, with Vectorized
Pandas UDFs
● Use Pandas UDFs to
convert existing
pandas code into
performant spark
UDFs
● Write pyspark
dataframes to Pandas
fast

Transfer learning with DL pipelines
● Use pre-trained neural networks to
harness the power of neural nets
on smaller data.
● Model inference using SparkSQL
UDFs

New: Databricks MLflow standardizes
ML Lifecycle
Track Experiments
Reproduce experiments
Build Model
Data Prep
Feed data to Models
Enrich data in experiments
Databricks Delta
Databricks Runtime for ML
MLflow Project & Tracker
Integrate with multiple clouds
Manage and monitor models
MLflow Serving
Deploy Model

MLflow Components
13
Tracking
Record and query
experiments: code,
data, config, results
Projects
Packaging format
for reproducible runs
on any platform
Models
General model format
that supports diverse
deployment tools

A word about where AI in
production is going

Thank you!
thunder@databricks.com
#SAISDS11
17

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The world of data architecture began with applications. Next came data warehouses. Then text was organized into a data warehouse. Then one day the world discovered a whole new kind of data that was being generated by organizations. The world found that machines generated data that could be transformed into valuable insights. This was the origin of what is today called the data lakehouse. The evolution of data architecture continues today. Come listen to industry experts describe this transformation of ordinary data into a data architecture that is invaluable to business. Simply put, organizations that take data architecture seriously are going to be at the forefront of business tomorrow. This is an educational event. Several of the authors of the book Building the Data Lakehouse will be presenting at this symposium.

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The document discusses the challenges of modern data, analytics, and AI workloads. Most enterprises struggle with siloed data systems that make integration and productivity difficult. The future of data lies with a data lakehouse platform that can unify data engineering, analytics, data warehousing, and machine learning workloads on a single open platform. The Databricks Lakehouse platform aims to address these challenges with its open data lake approach and capabilities for data engineering, SQL analytics, governance, and machine learning.

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In this session, learn how to quickly supplement your on-premises Hadoop environment with a simple, open, and collaborative cloud architecture that enables you to generate greater value with scaled application of analytics and AI on all your data. You will also learn five critical steps for a successful migration to the Databricks Lakehouse Platform along with the resources available to help you begin to re-skill your data teams.

Democratizing Data Quality Through a Centralized PlatformDatabricks

Bad data leads to bad decisions and broken customer experiences. Organizations depend on complete and accurate data to power their business, maintain efficiency, and uphold customer trust. With thousands of datasets and pipelines running, how do we ensure that all data meets quality standards, and that expectations are clear between producers and consumers? Investing in shared, flexible components and practices for monitoring data health is crucial for a complex data organization to rapidly and effectively scale. At Zillow, we built a centralized platform to meet our data quality needs across stakeholders. The platform is accessible to engineers, scientists, and analysts, and seamlessly integrates with existing data pipelines and data discovery tools. In this presentation, we will provide an overview of our platform’s capabilities, including: Giving producers and consumers the ability to define and view data quality expectations using a self-service onboarding portal Performing data quality validations using libraries built to work with spark Dynamically generating pipelines that can be abstracted away from users Flagging data that doesn’t meet quality standards at the earliest stage and giving producers the opportunity to resolve issues before use by downstream consumers Exposing data quality metrics alongside each dataset to provide producers and consumers with a comprehensive picture of health over time

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Data scientists face numerous challenges throughout the data science workflow that hinder productivity. As organizations continue to become more data-driven, a collaborative environment is more critical than ever — one that provides easier access and visibility into the data, reports and dashboards built against the data, reproducibility, and insights uncovered within the data.. Join us to hear how Databricks’ open and collaborative platform simplifies data science by enabling you to run all types of analytics workloads, from data preparation to exploratory analysis and predictive analytics, at scale — all on one unified platform.

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Application performance monitoring (APM) has become the cornerstone of software engineering allowing engineering teams to quickly identify and remedy production issues. However, as the world moves to intelligent software applications that are built using machine learning, traditional APM quickly becomes insufficient to identify and remedy production issues encountered in these modern software applications. As a lead software engineer at NewRelic, my team built high-performance monitoring systems including Insights, Mobile, and SixthSense. As I transitioned to building ML Monitoring software, I found the architectural principles and design choices underlying APM to not be a good fit for this brand new world. In fact, blindly following APM designs led us down paths that would have been better left unexplored. In this talk, I draw upon my (and my team’s) experience building an ML Monitoring system from the ground up and deploying it on customer workloads running large-scale ML training with Spark as well as real-time inference systems. I will highlight how the key principles and architectural choices of APM don’t apply to ML monitoring. You’ll learn why, understand what ML Monitoring can successfully borrow from APM, and hear what is required to build a scalable, robust ML Monitoring architecture.

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Autonomy and ownership are core to working at Stitch Fix, particularly on the Algorithms team. We enable data scientists to deploy and operate their models independently, with minimal need for handoffs or gatekeeping. By writing a simple function and calling out to an intuitive API, data scientists can harness a suite of platform-provided tooling meant to make ML operations easy. In this talk, we will dive into the abstractions the Data Platform team has built to enable this. We will go over the interface data scientists use to specify a model and what that hooks into, including online deployment, batch execution on Spark, and metrics tracking and visualization.

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In this talk, I will dive into the stage level scheduling feature added to Apache Spark 3.1. Stage level scheduling extends upon Project Hydrogen by improving big data ETL and AI integration and also enables multiple other use cases. It is beneficial any time the user wants to change container resources between stages in a single Apache Spark application, whether those resources are CPU, Memory or GPUs. One of the most popular use cases is enabling end-to-end scalable Deep Learning and AI to efficiently use GPU resources. In this type of use case, users read from a distributed file system, do data manipulation and filtering to get the data into a format that the Deep Learning algorithm needs for training or inference and then sends the data into a Deep Learning algorithm. Using stage level scheduling combined with accelerator aware scheduling enables users to seamlessly go from ETL to Deep Learning running on the GPU by adjusting the container requirements for different stages in Spark within the same application. This makes writing these applications easier and can help with hardware utilization and costs. There are other ETL use cases where users want to change CPU and memory resources between stages, for instance there is data skew or perhaps the data size is much larger in certain stages of the application. In this talk, I will go over the feature details, cluster requirements, the API and use cases. I will demo how the stage level scheduling API can be used by Horovod to seamlessly go from data preparation to training using the Tensorflow Keras API using GPUs. The talk will also touch on other new Apache Spark 3.1 functionality, such as pluggable caching, which can be used to enable faster dataframe access when operating from GPUs.

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In this talk, I would like to introduce an open-source tool built by our team that simplifies the data conversion from Apache Spark to deep learning frameworks. Imagine you have a large dataset, say 20 GBs, and you want to use it to train a TensorFlow model. Before feeding the data to the model, you need to clean and preprocess your data using Spark. Now you have your dataset in a Spark DataFrame. When it comes to the training part, you may have the problem: How can I convert my Spark DataFrame to some format recognized by my TensorFlow model? The existing data conversion process can be tedious. For example, to convert an Apache Spark DataFrame to a TensorFlow Dataset file format, you need to either save the Apache Spark DataFrame on a distributed filesystem in parquet format and load the converted data with third-party tools such as Petastorm, or save it directly in TFRecord files with spark-tensorflow-connector and load it back using TFRecordDataset. Both approaches take more than 20 lines of code to manage the intermediate data files, rely on different parsing syntax, and require extra attention for handling vector columns in the Spark DataFrames. In short, all these engineering frictions greatly reduced the data scientists’ productivity. The Databricks Machine Learning team contributed a new Spark Dataset Converter API to Petastorm to simplify these tedious data conversion process steps. With the new API, it takes a few lines of code to convert a Spark DataFrame to a TensorFlow Dataset or a PyTorch DataLoader with default parameters. In the talk, I will use an example to show how to use the Spark Dataset Converter to train a Tensorflow model and how simple it is to go from single-node training to distributed training on Databricks.

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There is no doubt Kubernetes has emerged as the next generation of cloud native infrastructure to support a wide variety of distributed workloads. Apache Spark has evolved to run both Machine Learning and large scale analytics workloads. There is growing interest in running Apache Spark natively on Kubernetes. By combining the flexibility of Kubernetes and scalable data processing with Apache Spark, you can run any data and machine pipelines on this infrastructure while effectively utilizing resources at disposal. In this talk, Rajesh Thallam and Sougata Biswas will share how to effectively run your Apache Spark applications on Google Kubernetes Engine (GKE) and Google Cloud Dataproc, orchestrate the data and machine learning pipelines with managed Apache Airflow on GKE (Google Cloud Composer). Following topics will be covered: – Understanding key traits of Apache Spark on Kubernetes- Things to know when running Apache Spark on Kubernetes such as autoscaling- Demonstrate running analytics pipelines on Apache Spark orchestrated with Apache Airflow on Kubernetes cluster.

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Pipelines have become ubiquitous, as the need for stringing multiple functions to compose applications has gained adoption and popularity. Common pipeline abstractions such as “fit” and “transform” are even shared across divergent platforms such as Python Scikit-Learn and Apache Spark. Scaling pipelines at the level of simple functions is desirable for many AI applications, however is not directly supported by Ray’s parallelism primitives. In this talk, Raghu will describe a pipeline abstraction that takes advantage of Ray’s compute model to efficiently scale arbitrarily complex pipeline workflows. He will demonstrate how this abstraction cleanly unifies pipeline workflows across multiple platforms such as Scikit-Learn and Spark, and achieves nearly optimal scale-out parallelism on pipelined computations. Attendees will learn how pipelined workflows can be mapped to Ray’s compute model and how they can both unify and accelerate their pipelines with Ray.

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We want to present multiple anti patterns utilizing Redis in unconventional ways to get the maximum out of Apache Spark.All examples presented are tried and tested in production at Scale at Adobe. The most common integration is spark-redis which interfaces with Redis as a Dataframe backing Store or as an upstream for Structured Streaming. We deviate from the common use cases to explore where Redis can plug gaps while scaling out high throughput applications in Spark. Niche 1 : Long Running Spark Batch Job – Dispatch New Jobs by polling a Redis Queue · Why? o Custom queries on top a table; We load the data once and query N times · Why not Structured Streaming · Working Solution using Redis Niche 2 : Distributed Counters · Problems with Spark Accumulators · Utilize Redis Hashes as distributed counters · Precautions for retries and speculative execution · Pipelining to improve performance

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In the era of microservices, decentralized ML architectures and complex data pipelines, data quality has become a bigger challenge than ever. When data is involved in complex business processes and decisions, bad data can, and will, affect the bottom line. As a result, ensuring data quality across the entire ML pipeline is both costly, and cumbersome while data monitoring is often fragmented and performed ad hoc. To address these challenges, we built whylogs, an open source standard for data logging. It is a lightweight data profiling library that enables end-to-end data profiling across the entire software stack. The library implements a language and platform agnostic approach to data quality and data monitoring. It can work with different modes of data operations, including streaming, batch and IoT data. In this talk, we will provide an overview of the whylogs architecture, including its lightweight statistical data collection approach and various integrations. We will demonstrate how the whylogs integration with Apache Spark achieves large scale data profiling, and we will show how users can apply this integration into existing data and ML pipelines.

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Machine learning (ML) models are typically part of prediction queries that consist of a data processing part (e.g., for joining, filtering, cleaning, featurization) and an ML part invoking one or more trained models. In this presentation, we identify significant and unexplored opportunities for optimization. To the best of our knowledge, this is the first effort to look at prediction queries holistically, optimizing across both the ML and SQL components. We will present Raven, an end-to-end optimizer for prediction queries. Raven relies on a unified intermediate representation that captures both data processing and ML operators in a single graph structure. This allows us to introduce optimization rules that (i) reduce unnecessary computations by passing information between the data processing and ML operators (ii) leverage operator transformations (e.g., turning a decision tree to a SQL expression or an equivalent neural network) to map operators to the right execution engine, and (iii) integrate compiler techniques to take advantage of the most efficient hardware backend (e.g., CPU, GPU) for each operator. We have implemented Raven as an extension to Spark’s Catalyst optimizer to enable the optimization of SparkSQL prediction queries. Our implementation also allows the optimization of prediction queries in SQL Server. As we will show, Raven is capable of improving prediction query performance on Apache Spark and SQL Server by up to 13.1x and 330x, respectively. For complex models, where GPU acceleration is beneficial, Raven provides up to 8x speedup compared to state-of-the-art systems. As part of the presentation, we will also give a demo showcasing Raven in action.

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Semantic segmentation is the classification of every pixel in an image/video. The segmentation partitions a digital image into multiple objects to simplify/change the representation of the image into something that is more meaningful and easier to analyze [1][2]. The technique has a wide variety of applications ranging from perception in autonomous driving scenarios to cancer cell segmentation for medical diagnosis. Exponential growth in the datasets that require such segmentation is driven by improvements in the accuracy and quality of the sensors generating the data extending to 3D point cloud data. This growth is further compounded by exponential advances in cloud technologies enabling the storage and compute available for such applications. The need for semantically segmented datasets is a key requirement to improve the accuracy of inference engines that are built upon them. Streamlining the accuracy and efficiency of these systems directly affects the value of the business outcome for organizations that are developing such functionalities as a part of their AI strategy. This presentation details workflows for labeling, preprocessing, modeling, and evaluating performance/accuracy. Scientists and engineers leverage domain-specific features/tools that support the entire workflow from labeling the ground truth, handling data from a wide variety of sources/formats, developing models and finally deploying these models. Users can scale their deployments optimally on GPU-based cloud infrastructure to build accelerated training and inference pipelines while working with big datasets. These environments are optimized for engineers to develop such functionality with ease and then scale against large datasets with Spark-based clusters on the cloud.

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At Adobe Experience Platform, we ingest TBs of data every day and manage PBs of data for our customers as part of the Unified Profile Offering. At the heart of this is a bunch of complex ingestion of a mix of normalized and denormalized data with various linkage scenarios power by a central Identity Linking Graph. This helps power various marketing scenarios that are activated in multiple platforms and channels like email, advertisements etc. We will go over how we built a cost effective and scalable data pipeline using Apache Spark and Delta Lake and share our experiences. What are we storing? Multi Source – Multi Channel Problem Data Representation and Nested Schema Evolution Performance Trade Offs with Various formats Go over anti-patterns used (String FTW) Data Manipulation using UDFs Writer Worries and How to Wipe them Away Staging Tables FTW Datalake Replication Lag Tracking Performance Time!

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Navigating the ML Pipeline Jungle with MLflow: Notes from the Field with Thunder Shiviah

1. Navigating the ML Pipeline Jungle with MLflow: Notes from the Field Thunder Shiviah thunder@databricks.com #SAISDS11

2. Who am I 2 ● Databricks Solutions Architect focused on machine learning and deep learning ● Previously McKinsey Data Scientist and QuantumBlack Machine Learning Engineer designing and building ML pipelines for Fortune 100 companies ● Developed and deployed models across diverse verticals such as healthcare, telecom, finance, and renewable energy

3. 3 ● Overview of challenges with AI in production ● How we’re solving these challenges ● Demos ● A final word on where AI in production is heading ● Q&A

4. AI is a Game Changing Opportunity OPPORTUNITY Fraud Detection Genome Sequencing Recommendation Engine Predictive Maintenance … LOTS OF NEW DATA Customer Data Click Streams Sensor data (IoT) Video/Speech … DATA SCIENTISTDATA ENGINEER BUSINESS Machine Learning Requires Collaborative Experimentation on Big Data

5. Hardest Part of AI isn’t AI, it’s plumbing ML Code Configuration Data Collection Data Verification Feature Extraction Machine Resource Management Analysis Tools Process Management Tools Serving Infrastructure Monitoring “Hidden Technical Debt in Machine Learning Systems,” Google NIPS 2015 Figure 1: Only a small fraction of real-world ML systems is composed of the ML code, as shown by the small green box in the middle. The required surrounding infrastructure is vast and complex.

6. ML Lifecycle is Manual, Inconsistent and Disconnected ● Ad hoc approach to track experiments ● Very hard to reproduce experiments Data Prep ● Multiple tightly coupled deployment options ● Different monitoring approach for each framework Build Model Deploy Model ● Low level integrations for Data and ML ● Difficult to track data used for a model

7. How we’re making AI in production simple

8. ● ML Runtime - Pre-configured ML libraries for CPU and GPU ● Pandas vectorized UDFs ● Distributed Transfer learning with deep learning pipelines ● MLflow Simplifying the AI pipeline

9. New: Databricks Runtime for ML Ready to use clusters with built-in ML Frameworks GPU support

10. Run your native Python code with PySpark, fast, with Vectorized Pandas UDFs ● Use Pandas UDFs to convert existing pandas code into performant spark UDFs ● Write pyspark dataframes to Pandas fast

11. Transfer learning with DL pipelines ● Use pre-trained neural networks to harness the power of neural nets on smaller data. ● Model inference using SparkSQL UDFs

12. New: Databricks MLflow standardizes ML Lifecycle Track Experiments Reproduce experiments Build Model Data Prep Feed data to Models Enrich data in experiments Databricks Delta Databricks Runtime for ML MLflow Project & Tracker Integrate with multiple clouds Manage and monitor models MLflow Serving Deploy Model

13. MLflow Components 13 Tracking Record and query experiments: code, data, config, results Projects Packaging format for reproducible runs on any platform Models General model format that supports diverse deployment tools

14. Demo

15. A word about where AI in production is going

16. Q&A 16

17. Thank you! thunder@databricks.com #SAISDS11 17

Navigating the ML Pipeline Jungle with MLflow: Notes from the Field with Thunder Shiviah

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