Connecting to a Linux system involves opening a terminal which displays the current directory, host, and shell prompt. The shell interprets commands and communicates with the Linux kernel. Common shells include bash, csh, korn, and tcsh. Basic commands like ls list files, cd changes directories, and man provides command help. File permissions control user, group, and world access to read, write, or execute files. Pipes allow output from one command to serve as input to another.