SSH is a cryptographic network protocol used to securely connect to remote systems. It uses public/private key encryption where the private key encrypts messages and the public key decrypts them. Common Linux file management commands like ls, cd, touch, and rm allow viewing, navigating, creating, and deleting files. The fdisk command manipulates partition tables and lsof lists open files and processes. Chroot changes the apparent root directory for a running process so it cannot access files outside that directory.