inria-00281012, version 1
NORINE: a database of nonribosomal peptides.
Ségolène Caboche a, 1, 2, 3Maude Pupin
b, 1, 2Valérie Leclère 3Arnaud Fontaine b, 1, 2Philippe Jacques 3Gregory Kucherov
c, 1, 2
Nucleic Acids Research 36, Database issue (2008) D326-31
Résumé : Norine is the first database entirely dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. It is performed by huge protein complexes called nonribosomal peptide synthetases (NRPSs). The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids. The primary structure of these peptides is not always linear but often more complex and may contain cycles and branchings. In recent years, NRPs attracted a lot of attention because of their biological activities and pharmacological properties (antibiotic, immunosuppressor, antitumor, etc.). However, few computational resources and tools dedicated to those peptides have been available so far. Norine is focused on NRPs and contains more than 700 entries. The database is freely accessible at http://bioinfo.lifl.fr/norine/. It provides a complete computational tool for systematic study of NRPs in numerous species, and as such, should permit to obtain a better knowledge of these metabolic products and underlying biological mechanisms, and ultimately to contribute to the redesigning of natural products in order to obtain new bioactive compounds for drug discovery.
- a – INRIA
- b – Université des Sciences et Technologies de Lille - Lille I
- c – CNRS
- 1 : Laboratoire d'Informatique Fondamentale de Lille (LIFL)
- CNRS : UMR8022 – Université Lille I - Sciences et technologies – Université Lille III - Sciences humaines et sociales – INRIA
- 2 : SEQUOIA (INRIA Lille - Nord Europe)
- INRIA – CNRS : UMR8022 – Université Lille I - Sciences et technologies – Université Lille III - Sciences humaines et sociales
- 3 : Laboratoire des Procédés Biologiques Génie Enzymatique et Microbien (PROBIOGEM)
- Fédération Universitaire et Polytechnique de Lille – Université Lille I - Sciences et technologies
- Domaine : Informatique/Bio-informatique
Sciences du Vivant/Bio-Informatique, Biologie Systémique
- Mots-clés : nonribosomal peptide database
- inria-00281012, version 1
- http://hal.inria.fr/inria-00281012
- oai:hal.inria.fr:inria-00281012
- Contributeur : Maude Pupin
- Soumis le : Jeudi 16 Mai 2013, 22:30:25
- Dernière modification le : Dimanche 19 Mai 2013, 21:14:40